R Development Page

lme4b log file (00install.out)

* installing *source* package ‘lme4b’ ...
** libs
g++ -I/srv/R/R-patched/build.13-02-14/include -DNDEBUG  -I/usr/local/include -I"/home/rforge/lib/R/2.15/Matrix/include"   -fpic  -g -O2  -c GLfamily.cpp -o GLfamily.o
g++ -I/srv/R/R-patched/build.13-02-14/include -DNDEBUG  -I/usr/local/include -I"/home/rforge/lib/R/2.15/Matrix/include"   -fpic  -g -O2  -c init.cpp -o init.o
g++ -I/srv/R/R-patched/build.13-02-14/include -DNDEBUG  -I/usr/local/include -I"/home/rforge/lib/R/2.15/Matrix/include"   -fpic  -g -O2  -c lme4utils.cpp -o lme4utils.o
gcc -std=gnu99 -I/srv/R/R-patched/build.13-02-14/include -DNDEBUG  -I/usr/local/include -I"/home/rforge/lib/R/2.15/Matrix/include"   -fpic  -g -O2  -c local_stubs.c -o local_stubs.o
g++ -I/srv/R/R-patched/build.13-02-14/include -DNDEBUG  -I/usr/local/include -I"/home/rforge/lib/R/2.15/Matrix/include"   -fpic  -g -O2  -c matrix.cpp -o matrix.o
g++ -I/srv/R/R-patched/build.13-02-14/include -DNDEBUG  -I/usr/local/include -I"/home/rforge/lib/R/2.15/Matrix/include"   -fpic  -g -O2  -c merenv.cpp -o merenv.o
g++ -shared -L/usr/local/lib -o lme4b.so GLfamily.o init.o lme4utils.o local_stubs.o matrix.o merenv.o -L/srv/R/R-patched/build.13-02-14/lib -lRlapack -L/srv/R/R-patched/build.13-02-14/lib -lRblas -lgfortran -lm -lquadmath -L/srv/R/R-patched/build.13-02-14/lib -lR
installing to /mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/lme4b.Rcheck/lme4b/libs
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a new generic function for ‘getCall’ in package ‘lme4b’
Creating a generic function for ‘coef’ from package ‘stats’ in package ‘lme4b’
Creating a generic function for ‘confint’ from package ‘stats’ in package ‘lme4b’
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘lme4b’
Creating a generic function for ‘formula’ from package ‘stats’ in package ‘lme4b’
Creating a generic function for ‘fixef’ from package ‘nlme’ in package ‘lme4b’
Creating a generic function for ‘ranef’ from package ‘nlme’ in package ‘lme4b’
Creating a generic function for ‘anova’ from package ‘stats’ in package ‘lme4b’
Creating a generic function for ‘vcov’ from package ‘stats’ in package ‘lme4b’
Creating a generic function for ‘VarCorr’ from package ‘nlme’ in package ‘lme4b’
Creating a generic function for ‘model.matrix’ from package ‘stats’ in package ‘lme4b’
Creating a generic function for ‘model.frame’ from package ‘stats’ in package ‘lme4b’
Creating a generic function for ‘terms’ from package ‘stats’ in package ‘lme4b’
Creating a generic function for ‘deviance’ from package ‘stats’ in package ‘lme4b’
Creating a generic function for ‘nlminb’ from package ‘stats’ in package ‘lme4b’
Creating a generic function for ‘bobyqa’ from package ‘minqa’ in package ‘lme4b’
Creating a generic function for ‘optimize’ from package ‘stats’ in package ‘lme4b’
Creating a generic function for ‘profile’ from package ‘stats’ in package ‘lme4b’
** help
Warning: /mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/lme4b.Rcheck/00_pkg_src/lme4b/man/fixef.Rd: docType ‘genericFunction’ is unrecognized
Warning: /mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/lme4b.Rcheck/00_pkg_src/lme4b/man/ranef.Rd: Multiple \docType sections are not supported
Warning: /mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/lme4b.Rcheck/00_pkg_src/lme4b/man/ranef.Rd: docType ‘genericFunction’ is unrecognized
*** installing help indices
** building package indices
** installing vignettes
   ‘PLSvGLS.Rnw’ 
Warning: value of 'strip.white' option should be lowercase
   ‘Theory.Rnw’ 
Warning: value of 'strip.white' option should be lowercase
** testing if installed package can be loaded
Warning: S3 methods ‘plot.coef.mer’, ‘dotplot.coef.mer’, ‘plot.ranef.mer’, ‘qqmath.ranef.mer’, ‘dotplot.ranef.mer’ were declared in NAMESPACE but not found

* DONE (lme4b)