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intReg log file (check_x86_64_linux)
Sun Aug 21 21:45:23 2016: Checking package intReg (SVN revision 1725) ...
* using log directory ‘/mnt/building/build_2016-08-21-21-43/RF_PKG_CHECK/PKGS/intReg.Rcheck’
* using R version 3.3.1 Patched (2016-08-19 r71123)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘intReg/DESCRIPTION’ ... OK
* this is package ‘intReg’ version ‘0.2-9’
* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers
Maintainer: ‘Ott Toomet ’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘intReg’ can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [6s/6s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘general.R’
Comparing ‘general.Rout’ to ‘general.Rout.save’ ...99,101c99,100
< stdEr.intReg..
< (Intercept) sexmale log(income)
< 1.1474 0.7294 0.4191 NA
---
> (Intercept) sexmale log(income) sigma
> 1.1474 0.7294 0.4191 0.4426
107,109c106,119
< stdEr.intReg..
< (Intercept) sexmale log(income) sigma
< 1.1474 0.7294 0.4191 0.4426
---
> (Intercept) sexmale log(income) L 1 U 1 L 2
> 1.1474 0.7294 0.4191 0.0000 0.0000 0.0000
> U 2 L 3 U 3 L 4 U 4 L 5
> 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
> U 5 L 6 U 6 L 7 U 7 L 8
> 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
> U 8 L 9 U 9 L 10 U 10 L 11
> 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
> U 11 L 12 U 12 L 13 U 13 L 14
> 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
> U 14 L 15 U 15 L 16 U 16 L 17
> 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
> U 17 sigma
> 0.0000 0.4426
115d124
< stdEr.intReg..
127c136
< sigma 2.736 NA NA NA
---
> sigma 2.736 0.443 6.18 1.5e-08 ***
131,135d139
< Warning messages:
< 1: In coef.maxLik(object)/stdEr.maxLik(object, eigentol = eigentol) :
< longer object length is not a multiple of shorter object length
< 2: In cbind(Estimate = coef.maxLik(object), `Std. error` = stdEr.maxLik(object, :
< number of rows of result is not a multiple of vector length (arg 2)
139d142
< stdEr.intReg..
148,185c151,188
< (Intercept) 3.694 1.147 3.22 0.00175 **
< sexmale -1.066 0.729 -1.46 0.14722
< log(income) 0.354 0.419 0.85 0.40017
< L 1 -Inf 0.443 -Inf < 2e-16 ***
< U 1 0.693 1.147 0.60 0.54720
< L 2 -Inf 0.729 -Inf < 2e-16 ***
< U 2 1.609 0.419 3.84 0.00022 ***
< L 3 -Inf 0.443 -Inf < 2e-16 ***
< U 3 2.996 1.147 2.61 0.01048 *
< L 4 -Inf 0.729 -Inf < 2e-16 ***
< U 4 3.912 0.419 9.33 4.0e-15 ***
< L 5 1.609 0.443 3.64 0.00045 ***
< U 5 1.609 1.147 1.40 0.16394
< L 6 1.609 0.729 2.21 0.02973 *
< U 6 2.996 0.419 7.15 1.7e-10 ***
< L 7 2.996 0.443 6.77 1.0e-09 ***
< U 7 2.996 1.147 2.61 0.01048 *
< L 8 2.996 0.729 4.11 8.4e-05 ***
< U 8 3.912 0.419 9.33 4.0e-15 ***
< L 9 2.996 0.443 6.77 1.0e-09 ***
< U 9 Inf 1.147 Inf < 2e-16 ***
< L 10 3.912 0.729 5.36 5.6e-07 ***
< U 10 3.912 0.419 9.33 4.0e-15 ***
< L 11 3.912 0.443 8.84 4.7e-14 ***
< U 11 4.605 1.147 4.01 0.00012 ***
< L 12 3.912 0.729 5.36 5.6e-07 ***
< U 12 Inf 0.419 Inf < 2e-16 ***
< L 13 4.605 0.443 10.40 < 2e-16 ***
< U 13 4.605 1.147 4.01 0.00012 ***
< L 14 4.605 0.729 6.31 8.4e-09 ***
< U 14 5.521 0.419 13.18 < 2e-16 ***
< L 15 4.605 0.443 10.40 < 2e-16 ***
< U 15 Inf 1.147 Inf < 2e-16 ***
< L 16 5.521 0.729 7.57 2.3e-11 ***
< U 16 5.521 0.419 13.18 < 2e-16 ***
< L 17 5.521 0.443 12.47 < 2e-16 ***
< U 17 Inf 1.147 Inf < 2e-16 ***
< sigma 2.736 0.729 3.75 0.00030 ***
---
> (Intercept) 3.694 1.147 3.22 0.0018 **
> sexmale -1.066 0.729 -1.46 0.1472
> log(income) 0.354 0.419 0.85 0.4002
> L 1 -Inf 0.000 -Inf < 2e-16 ***
> U 1 0.693 0.000 Inf < 2e-16 ***
> L 2 -Inf 0.000 -Inf < 2e-16 ***
> U 2 1.609 0.000 Inf < 2e-16 ***
> L 3 -Inf 0.000 -Inf < 2e-16 ***
> U 3 2.996 0.000 Inf < 2e-16 ***
> L 4 -Inf 0.000 -Inf < 2e-16 ***
> U 4 3.912 0.000 Inf < 2e-16 ***
> L 5 1.609 0.000 Inf < 2e-16 ***
> U 5 1.609 0.000 Inf < 2e-16 ***
> L 6 1.609 0.000 Inf < 2e-16 ***
> U 6 2.996 0.000 Inf < 2e-16 ***
> L 7 2.996 0.000 Inf < 2e-16 ***
> U 7 2.996 0.000 Inf < 2e-16 ***
> L 8 2.996 0.000 Inf < 2e-16 ***
> U 8 3.912 0.000 Inf < 2e-16 ***
> L 9 2.996 0.000 Inf < 2e-16 ***
> U 9 Inf 0.000 Inf < 2e-16 ***
> L 10 3.912 0.000 Inf < 2e-16 ***
> U 10 3.912 0.000 Inf < 2e-16 ***
> L 11 3.912 0.000 Inf < 2e-16 ***
> U 11 4.605 0.000 Inf < 2e-16 ***
> L 12 3.912 0.000 Inf < 2e-16 ***
> U 12 Inf 0.000 Inf < 2e-16 ***
> L 13 4.605 0.000 Inf < 2e-16 ***
> U 13 4.605 0.000 Inf < 2e-16 ***
> L 14 4.605 0.000 Inf < 2e-16 ***
> U 14 5.521 0.000 Inf < 2e-16 ***
> L 15 4.605 0.000 Inf < 2e-16 ***
> U 15 Inf 0.000 Inf < 2e-16 ***
> L 16 5.521 0.000 Inf < 2e-16 ***
> U 16 5.521 0.000 Inf < 2e-16 ***
> L 17 5.521 0.000 Inf < 2e-16 ***
> U 17 Inf 0.000 Inf < 2e-16 ***
> sigma 2.736 0.443 6.18 1.5e-08 ***
189,199d191
< Warning messages:
< 1: In coef.maxLik(object)/stdEr.maxLik(object, eigentol = eigentol) :
< longer object length is not a multiple of shorter object length
< 2: In cbind(Estimate = coef.maxLik(object), `Std. error` = stdEr.maxLik(object, :
< number of rows of result is not a multiple of vector length (arg 2)
< 3: In coef/stdErr :
< longer object length is not a multiple of shorter object length
< 4: In cbind(coef, stdErr, coef/stdErr, rep(NA, length(coef))) :
< number of rows of result is not a multiple of vector length (arg 2)
< 5: In coef/stdErr :
< longer object length is not a multiple of shorter object length
300d291
< stdEr.intReg..
309,316c300,307
< (Intercept) 1.908 0.184 10.38 < 2e-16 ***
< factor(educ)2 0.222 0.188 1.18 0.23921
< factor(educ)3 0.396 0.185 2.15 0.03315 *
< factor(educ)4 0.490 0.193 2.54 0.01204 *
< factor(educ)5 0.708 0.188 3.76 0.00022 ***
< poly(exper, 2)1 2.017 0.346 5.83 2.3e-08 ***
< poly(exper, 2)2 -0.872 0.320 -2.73 0.00694 **
< sigma 0.258 NA NA NA
---
> (Intercept) 1.9082 0.1839 10.38 < 2e-16 ***
> factor(educ)2 0.2218 0.1879 1.18 0.23921
> factor(educ)3 0.3964 0.1847 2.15 0.03315 *
> factor(educ)4 0.4904 0.1934 2.54 0.01204 *
> factor(educ)5 0.7075 0.1881 3.76 0.00022 ***
> poly(exper, 2)1 2.0167 0.3460 5.83 2.3e-08 ***
> poly(exper, 2)2 -0.8724 0.3197 -2.73 0.00694 **
> sigma 0.2582 0.0188 13.71 < 2e-16 ***
320,324d310
< Warning messages:
< 1: In coef.maxLik(object)/stdEr.maxLik(object, eigentol = eigentol) :
< longer object length is not a multiple of shorter object length
< 2: In cbind(Estimate = coef.maxLik(object), `Std. error` = stdEr.maxLik(object, :
< number of rows of result is not a multiple of vector length (arg 2)
376d361
< stdEr.intReg..
386c371
< sigma 0.4371 NA NA NA
---
> sigma 0.4371 0.0376 11.6 <2e-16 ***
397d381
< stdEr.intReg..
407c391
< sigma 0.4373 NA NA NA
---
> sigma 0.4373 0.0377 11.6 <2e-16 ***
420d403
< stdEr.intReg..
429,436c412,419
< (Intercept) 1.921 0.170 11.28 < 2e-16 ***
< factor(educ)2 0.210 0.174 1.21 0.2271
< factor(educ)3 0.371 0.171 2.17 0.0314 *
< factor(educ)4 0.480 0.179 2.68 0.0080 **
< factor(educ)5 0.694 0.175 3.97 0.0001 ***
< poly(exper, 2)1 1.972 0.334 5.90 1.6e-08 ***
< poly(exper, 2)2 -0.878 0.307 -2.86 0.0047 **
< sigma 0.141 NA NA NA
---
> (Intercept) 1.9212 0.1703 11.28 < 2e-16 ***
> factor(educ)2 0.2104 0.1736 1.21 0.2271
> factor(educ)3 0.3714 0.1714 2.17 0.0314 *
> factor(educ)4 0.4801 0.1790 2.68 0.0080 **
> factor(educ)5 0.6939 0.1748 3.97 0.0001 ***
> poly(exper, 2)1 1.9719 0.3342 5.90 1.6e-08 ***
> poly(exper, 2)2 -0.8784 0.3068 -2.86 0.0047 **
> sigma 0.1413 0.0128 11.03 < 2e-16 ***
440,444d422
< Warning messages:
< 1: In coef.maxLik(object)/stdEr.maxLik(object, eigentol = eigentol) :
< longer object length is not a multiple of shorter object length
< 2: In cbind(Estimate = coef.maxLik(object), `Std. error` = stdEr.maxLik(object, :
< number of rows of result is not a multiple of vector length (arg 2)
[2s/2s] OK
* checking PDF version of manual ... OK
* DONE
Status: OK
Run time: 35.11 seconds.