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pimold log file (check_x86_64_linux)

Wed Feb 17 15:05:34 2016: Checking package pimold (SVN revision 110) ...
* using log directory ‘/mnt/building/build_2016-02-17-15-04/RF_PKG_CHECK/PKGS/pimold.Rcheck’
* using R version 3.2.3 Patched (2016-02-15 r70179)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘pimold/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pimold’ version ‘1.1.5.6’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Nick Sabbe ’
New submission

The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pimold’ can be installed ... [4s/4s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.cvpo.glmnet: no visible global function definition for ‘glmnet’
.cvpo.glmnet: no visible global function definition for ‘getmin’
crossvalidate.pim: no visible global function definition for
  ‘cv.glmnet’
estimator.BB : rv: no visible global function definition for ‘BBsolve’
estimator.glmnet : actualfunction: no visible global function
  definition for ‘glmnet’
estimator.lqa: no visible global function definition for ‘lqa.control’
estimator.lqa : actualfunction: no visible global function definition
  for ‘lqa’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'crossvalidate.pim.Rd':
  \examples lines wider than 100 characters:
     pen.formula<-paste("y~", paste(c("F(x)", setdiff(colnames(pendta), c("x", "y"))), collapse="+"), sep="")

Rd file 'pim.Rd':
  \examples lines wider than 100 characters:
     pimb<-pim(out~I((R(Sepal.Length) - L(Sepal.Length))/sqrt(R(Sepal.Length) * L(Sepal.Length)) ), data=iris, 
                     org="I((R(Sepal.Length) - L(Sepal.Length))/sqrt(R(Sepal.Length) * L(Sepal.Length)) )", 

Rd file 'pimformula.Rd':
  \examples lines wider than 100 characters:
     pimformula(out~I((R(Sepal.Length) - L(Sepal.Length))/sqrt(R(Sepal.Length) * L(Sepal.Length)) ), data=iris, interpretation="regular")
     pim.fit.prep(out~I((R(Sepal.Length) - L(Sepal.Length))/sqrt(R(Sepal.Length) * L(Sepal.Length)) ), data=iris, interpretation="regular")

Rd file 'pimsym.Rd':
  \examples lines wider than 100 characters:
     pimb<-pim(out~I((R(Sepal.Length) - L(Sepal.Length))/sqrt(R(Sepal.Length) * L(Sepal.Length)) ), data=iris, 
                     org="I((R(Sepal.Length) - L(Sepal.Length))/sqrt(R(Sepal.Length) * L(Sepal.Length)) )", 

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [15s/15s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
   ‘pim.Rnw’ using ‘UTF-8’ ... [10s/10s] OK
   ‘pim.legacy.Rnw’ using ‘UTF-8’ ... [4s/4s] OK
 [14s/14s] OK
* checking re-building of vignette outputs ... [15s/16s] OK
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  ‘/mnt/building/build_2016-02-17-15-04/RF_PKG_CHECK/PKGS/pimold.Rcheck/00check.log’
for details.


Run time: 111.5 seconds.