Software Map
Tag cloud  Project Tree  Project List
ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Rcmdr Regression SNP Statistics Time series Visualization Wholegenome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonparametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatiotemporal species distribution models stochastic processes survival teaching text mining time series visualization
10 projects in result set.
Analysis of Count Time Series  R package which provides likelihoodbased methods for model fitting and assessment, prediction and intervention analysis of count time series following generalized linear models.  
Tags: time series, autocorrelation, break detection, change detection, regression, count data  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20130404 13:48 
Breakpoint detection error  Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.  
Tags: Bioinformatics, Copy number variant, Copynumber, break detection, change detection  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20121127 16:51 
Fast kernel changepoint procedure  This package implements the Kernseg procedure described in the paper "New efficient algorithms for multiple changepoint detection with kernels (A. Celisse, G. Marot, M. PierreJean, G. Rigaill) available at https://arxiv.org/abs/1710.04556  
Tags: reproducing kernel, Bioinformatics & Biostatistics, Biostatistics, CNV, Copy number variant, Copynumber, Statistics, Time series, bioinformatics, biostatistics, break detection, breakpoint, change detection, change point, changepoint, dynamic programming, machine learning, model selection, multivariate analysis, multivariate statistics, nonparametric, segmentation, time series  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20171218 14:11 
Robust time series analysis  Provides various approaches for robust estimation of (partial) autocorrelation and autocovariance. There are also procedures for robust fitting and filtering of AR(p) processes as well as for robust change point detection.  
Tags: robust statistics, time series, autocorrelation, change detection, outlier detection  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20141111 15:14 
SegAnnot  SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals.  
Tags: Copy number variant, Copynumber, break detection, change detection, optimization, segmentation  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20121127 16:58 
Segmentor3IsBack  Segmentor3IsBack is an R package for the optimal and fast segmentation of datasets with respect to the loglikelihood loss. The main code has been developed in C++ in a versatile manner, and embeded in an R package.  
Tags: Copynumber, Sequence analysis, break detection, change detection, likelihood, optimization  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120524 16:38 
Yuima Project  The project for simulation and inference of multidimensional stochastic differential equations.  
Tags: finance, stochastic processes, stochastic differential equation, estimation, time series, model selection, change point, Bayesian, Finance, MCMC, Monte Carlo, Statistics, change detection, changepoint, dynamic systems, inference, likelihood, option, option pricing, simulation, simulations, statistical inference, statistics, stochastic, stochastic differential equations  

Activity Percentile: 3 Activity Ranking: 31 Registered: 20090928 11:24 
iMad/RADCAL  NOT FUNCTIONAL  THIS ALGORITHM WAS NEVER COMPLETED, AND IS DEPRECATED. PLEASE FIND ANOTHER WAY TO RUN THIS.  
Tags: raster, remote sensing, radiometric normalization, change detection  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120423 16:53 
lm.br  Exact significance tests for a changepoint in linear or multiple linear regression. Confidence intervals and confidence regions with exact coverage probabilities for the changepoint.  
Tags: changepoint, breakpoint, brokenline regression, change detection, linear models, nonlinear models, regression, structural break, thresholds, break detection, Regression, Multivariate Regression, multivariate, multivariate regression, multiple regression, Multivariate Analysis  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20130225 20:29 
surveillance  The Rpackage 'surveillance' is a framework for the development of statistical methods for the modeling and changepoint detection in time series of counts, proportions and categorical data as well as continuoustime epidemic like point process phenomena.  
Tags: Ecology, autocorrelation, biostatistics, break detection, categorical, change detection, disease mapping, dynamic systems, ecology, event histories, model specification, regression, spatial, spatial data, spatial methods, spatiotemporal, spatiotemporal point patterns  

Activity Percentile: 6 Activity Ranking: 30 Registered: 20070619 14:46 