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ClassDiscovery log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2024-04-26-17-43/RF_PKG_CHECK/PKGS/ClassDiscovery.Rcheck'
* using R version 4.4.0 Patched (2024-04-24 r86483 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows 10 x64 (build 19045)
* using session charset: UTF-8
* using option '--as-cran'
* checking for file 'ClassDiscovery/DESCRIPTION' ... OK
* this is package 'ClassDiscovery' version '3.4.4'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Kevin R. Coombes '

Found the following (possibly) invalid URLs:
  URL: http://www.camda.info (moved to https://bipress.boku.ac.at/camda-play/)
    From: man/cd08-0-PCanova-class.Rd
    Status: 200
    Message: OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'ClassDiscovery' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... NOTE
Unable to find GhostScript executable to run checks on size reduction
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'exprSet-example.R'
  Comparing 'exprSet-example.Rout' to 'exprSet-example.Rout.save' ... OK
  Running 'test00-color.R'
  Comparing 'test00-color.Rout' to 'test00-color.Rout.save' ... OK
  Running 'test01-distance.R'
  Comparing 'test01-distance.Rout' to 'test01-distance.Rout.save' ... OK
  Running 'test02-cluster.R'
  Comparing 'test02-cluster.Rout' to 'test02-cluster.Rout.save' ... OK
  Running 'test02.1-just.R'
  Comparing 'test02.1-just.Rout' to 'test02.1-just.Rout.save' ... OK
  Running 'test03-boot.R'
  Comparing 'test03-boot.Rout' to 'test03-boot.Rout.save' ... OK
  Running 'test04-perturb.R'
  Comparing 'test04-perturb.Rout' to 'test04-perturb.Rout.save' ... OK
  Running 'test04.1-gpca.R'
  Comparing 'test04.1-gpca.Rout' to 'test04.1-gpca.Rout.save' ... OK
  Running 'test05-spca.R'
  Comparing 'test05-spca.Rout' to 'test05-spca.Rout.save' ... OK
  Running 'test06-mosaic.R'
  Comparing 'test06-mosaic.Rout' to 'test06-mosaic.Rout.save' ... OK
  Running 'test07-pcanova.R'
  Comparing 'test07-pcanova.Rout' to 'test07-pcanova.Rout.save' ... OK
 [12s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [16s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... NOTE
Skipping checking HTML validation: no command 'tidy' found
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 3 NOTEs
See
  'R:/run/building/build_2024-04-26-17-43/RF_PKG_CHECK/PKGS/ClassDiscovery.Rcheck/00check.log'
for details.

Run time: 77.3 seconds.