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ForAI log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2014-12-16-01-23/RF_PKG_CHECK/PKGS/ForAI.Rcheck'
* using R version 3.1.2 Patched (2014-12-11 r67166)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'ForAI/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ForAI' version '0.0.5'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Aranildo Lima '
New submission
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ForAI' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  'dev' 'test'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
svres: no visible global function definition for 'tuneRF'
svres: no visible global function definition for 'Boruta'
svres: no visible global function definition for 'TentativeRoughFix'
* checking Rd files ... WARNING
prepare_Rd: Elm.cross.valid.Rd:27-29: Dropping empty section \details
prepare_Rd: Elm.cross.valid.Rd:41-43: Dropping empty section \note
prepare_Rd: Elm.cross.valid.Rd:38-40: Dropping empty section \author
prepare_Rd: Elm.cross.valid.Rd:35-37: Dropping empty section \references
prepare_Rd: Elm.cross.valid.Rd:47-49: Dropping empty section \seealso
prepare_Rd: Elm.predict.Rd:26-28: Dropping empty section \note
prepare_Rd: Elm.predict.Rd:23-25: Dropping empty section \author
prepare_Rd: Elm.predict.Rd:32-34: Dropping empty section \seealso
prepare_Rd: Elm.search.hc.Rd:27-29: Dropping empty section \details
prepare_Rd: Elm.search.hc.Rd:40-42: Dropping empty section \note
prepare_Rd: Elm.search.hc.Rd:37-39: Dropping empty section \author
prepare_Rd: Elm.search.hc.Rd:46-48: Dropping empty section \seealso
prepare_Rd: Elm.train.Rd:55-57: Dropping empty section \seealso
prepare_Rd: ForAI-package.Rd:55-56: Dropping empty section \examples
prepare_Rd: Olelm.update.Rd:15-17: Dropping empty section \details
prepare_Rd: Olelm.update.Rd:34-36: Dropping empty section \note
prepare_Rd: Olelm.update.Rd:29-31: Dropping empty section \references
prepare_Rd: Olelm.update.Rd:40-42: Dropping empty section \seealso
prepare_Rd: Olelm.update.Rd:43-44: Dropping empty section \examples
prepare_Rd: olelm.update.beta.Rd:25-27: Dropping empty section \details
prepare_Rd: olelm.update.beta.Rd:37-39: Dropping empty section \note
prepare_Rd: olelm.update.beta.Rd:33-35: Dropping empty section \references
prepare_Rd: olelm.update.beta.Rd:43-45: Dropping empty section \seealso
prepare_Rd: olelm.update.beta.Rd:46-47: Dropping empty section \examples
olmlr.predict.Rd: non-ASCII input and no declared encoding
prepare_Rd: svres.Rd:52-54: Dropping empty section \note
prepare_Rd: svres.Rd:58-60: Dropping empty section \seealso
prepare_Rd: train.svr.Rd:22-24: Dropping empty section \details
prepare_Rd: train.svr.Rd:39-41: Dropping empty section \note
prepare_Rd: train.svr.Rd:36-38: Dropping empty section \author
prepare_Rd: train.svr.Rd:33-35: Dropping empty section \references
prepare_Rd: train.svr.Rd:45-47: Dropping empty section \seealso
problem found in 'olmlr.predict.Rd'
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'Elm.search.hc.Rd':
  \examples lines wider than 100 characters:
     elm.fit.values <- rescale(trained.elm$predictionTrain,to= range(as.matrix(wtloss$Weight)),from=c(-1,1))

Rd file 'Elm.train.Rd':
  \examples lines wider than 100 characters:
       elm.fit.values <- rescale(trained.elm$predictionTrain,to= range(as.matrix(wtloss$Weight)),from=c(-1,1))

Rd file 'svres.Rd':
  \usage lines wider than 90 characters:
       svres(X.train, Y.train, X.test, PercentValid = 20, Generations = 500, InitialGamma = 0.001, ErrorFunc = MSE, Step = FALSE, StepBoruta ... [TRUNCATED]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... WARNING
Unknown package '' in Rd xrefs
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'olmlr.optmization' 'olmlr.update'
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

WARNING: There were 3 warnings.
NOTE: There were 5 notes.
See
  'R:/run/building/build_2014-12-16-01-23/RF_PKG_CHECK/PKGS/ForAI.Rcheck/00check.log'
for details.

Run time: 34.94 seconds.