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PhyloOrchard log file (check_x86_64_linux)

Fri Jun 14 16:18:11 2013: Checking package PhyloOrchard (SVN revision 66) ...
* using log directory ‘/mnt/building/build_2013-06-14-16-03/RF_PKG_CHECK/PKGS/PhyloOrchard.Rcheck’
* using R version 3.0.1 Patched (2013-06-04 r62868)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘PhyloOrchard/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PhyloOrchard’ version ‘0.3’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Brian C. O'Meara ’
New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PhyloOrchard’ can be installed ... [1s/3s] OK
* checking installed package size ... NOTE
  installed size is 13.0Mb
  sub-directories of 1Mb or more:
    data  12.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... WARNING
Error : LopezFernandezEtAl2012.Rd: non-ASCII input and no declared encoding

prepare_Rd: Unpub1.Rd:13-15: Dropping empty section \source
prepare_Rd: Unpub2.Rd:13-15: Dropping empty section \source
prepare_Rd: Unpub3.Rd:13-15: Dropping empty section \source
problem found in ‘LopezFernandezEtAl2012.Rd’
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [1s/2s] OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  ‘/mnt/building/build_2013-06-14-16-03/RF_PKG_CHECK/PKGS/PhyloOrchard.Rcheck/00check.log’
for details.

Run time: 58.28 seconds.