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Topic > Bioinformatics |
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63 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry,
with functions for equilibrium activity diagrams and chemical affinities of reactions,
supported by an extensive thermodynamic database and group additivity for proteins. |
- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Chemoinformatics [Filter]
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Activity Percentile: 78.57
Registered: 2011-05-13 20:48 |
1. RHRV - Package for carrying out heart rate variability studies of ECG records |
- Development Status : 6 - Mature [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
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Activity Percentile: 64.29
Registered: 2010-10-14 10:22 |
2. SBML Model Package - A collection of SBML Models with some experimental and simulated datasets. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
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Activity Percentile: 0.00
Registered: 2009-12-15 12:39 |
3. PhyloConductor - PhyloConductor aims to form a collection of R packages for phylogenetic, comparative, and other evolutionary analysis that is coherent and user-accessible. Initially we focus on comparative phylogenetic methods for the analysis of trait evolution. |
- Development Status : 1 - Planning [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Other/Nonlisted Topic [Filter]
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Activity Percentile: 0.00
Registered: 2007-12-05 06:24 |
4. Rigorous Analytics - Software for the quantitative analysis of medical imaging data. Medical imaging data formats include DICOM, AFNI, ANALYZE and NIfTI. |
- Development Status : 3 - Alpha [Filter]
- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : BSD License [Filter]
- Natural Language : English [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
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Activity Percentile: 0.00
Registered: 2010-01-18 10:18 |
5. polyploid - We provide tools for polyploid data, covering topics from genotype calling, over linkage mapping to haplotyping. Further we allow users to simulate own data sets for given genotypes and population structures. |
- Development Status : 2 - Pre-Alpha [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Activity Percentile: 0.00
Registered: 2014-02-05 10:27 |
6. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples.
Currently hosted packages: csSAM and CellMix packages. |
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Genetics [Filter]
- Topic : Software Development [Filter]
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Activity Percentile: 0.00
Registered: 2013-04-11 08:27 |
8. RpepXML - R pepXML is an R interface to the pepXML standard for MSMS data identification. It allows pepXML files to be imported into R and for easy manipulation and filtering. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Other Environment [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : Artistic License [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
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Activity Percentile: 0.00
Registered: 2010-09-03 21:34 |
9. Variant Pattern Analyzer - VPA (Variant Pattern Analyzer) is an R package for prioritizing variants with user-specified frequency pattern from multiple study subjects in next generation sequencing study. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
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Activity Percentile: 0.00
Registered: 2011-08-05 14:30 |
10. COXMEG - COXMEG provides a tool to fit a Cox mixed-effects model, incorporating fast algorithms for genome-wide association analysis. |
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
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Activity Percentile: 0.00
Registered: 2019-08-02 18:19 |
11. Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS).
Packages in this project: PSCBS. |
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Activity Percentile: 0.00
Registered: 2009-10-20 01:21 |
12. HTSanalyzeR - HTSanalyzeR provides state-of-the-art analysis methods of pathway and network enrichment for High-Throughput Screens in a unified framework and provides easy-to-understand HTML output |
- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
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Activity Percentile: 0.00
Registered: 2010-06-28 19:28 |
13. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Datasets [Filter]
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Activity Percentile: 0.00
Registered: 2014-01-22 14:22 |
14. Plant Growth Analysis - Plant Growth Analysis tools for R. It has tools to calculate Relative Growth Rate, Leaf Area Ratio, Leaf Specific Area, Leaf Weight Ratio, Unity Leaf Ratio, Root-Shoot Allometry. |
- Development Status : 3 - Alpha [Filter]
- Environment : Other Environment [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
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Activity Percentile: 0.00
Registered: 2011-04-04 14:59 |
15. RMesquite - RMesquite establishes interoperability between Mesquite (http://mesquiteproject.org) and R. It exposes Mesquite methods transparently as R functions that consume and provide native R data types, and converts seamlessly between Java and R data types. |
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : Java [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Genetics : Phylogenetics [Filter]
- Topic : Multivariate Statistics [Filter]
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Activity Percentile: 0.00
Registered: 2008-07-17 03:57 |
16. picante - PICANTE: Phylocom integration, community analyses, null-models, traits and evolution in R |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Genetics : Phylogenetics [Filter]
- Topic : Multivariate Statistics [Filter]
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Activity Percentile: 0.00
Registered: 2008-01-16 22:15 |
17. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : German [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Genetics [Filter]
- Topic : High Performance Computing [Filter]
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Activity Percentile: 0.00
Registered: 2013-05-29 18:34 |
18. Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : Fortran [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : High Performance Computing [Filter]
- Topic : Machine Learning [Filter]
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Activity Percentile: 0.00
Registered: 2012-08-10 08:48 |
19. Continuous Character Transitions - maticce: Mapping Transitions In Continuous Character Evolution
This project provides tools for an information-theoretic approach to estimating the probability of continuous character transitions on phylogenetic trees. |
- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Genetics : Phylogenetics [Filter]
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Activity Percentile: 0.00
Registered: 2008-11-07 19:39 |
63 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>